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Skills

Omics data analysis:

Programming/scripting:

Other:

Languages:

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Last updated on 2021-04-20

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Adrià Mitjavila Ventura

Bioinformatician at Istituto Europeo di Oncologia

Biotechnologist living around computers. Interested in data analysis to support experimental research as well as in pure computational experiments and in software/pipeline development.

References available upon request.

Experience

Bioinformatician

Istituto Europeo di Oncologia

Milan, Italy

07/2019 - Present

Pasini’s lab
Analysis of omics data analysis (RNA-seq, ChIP-seq, ATAC-seq) | Comparison of different ATAC-seq peak callers. | Development of an ATAC-seq pipeline for Snakemake.

Research Assistant

Instituto de Biomedicina de Sevilla

Seville, Spain

07/2018 - 10/2018

Gene expression lab
Analysis of MNase-seq data from Ccr4-mutant yeast.

Master’s thesis student

Instituto de Biomedicina de Sevilla

Seville, Spain

09/2017 - 07/2018

Gene expression lab
Analysis of MNase-seq data from Xrn1-mutant yeast | MNase-qPCR experiments, including MNase DNA digestion, primer desing, qPCRs and analysis.

  • Supervisors: Dr. Sebastián Chávez de Diego and Dr. Gabriel Gutierrez Pozo.
  • MSc degree in Molecular Genetics and Biotechnology.

Internship student

Institut d’Investigació Biomèdica de Girona

Girona, Spain

07/2017 - 09/2017

Unit of Diabetes, Endocrinology and Nutrition
Identification of new factors (genetic and bacterial) related to adipose tissue physiology and obesity.

Bachelor’s thesis student

Microbial. Sistemes i aplicacions analítiques, S.L.

Girona, Spain

01/2017 - 06/2017

DNA extraction of intestinal mucosa biopsies | qPCR experiments to detect clusters and families of bacteria | NGS data analysis to quantify bacterial genders in intestinal biopsies.

  • Supervisor: Prof. Jesús García-Gil.
  • BSc degree in Biotecnology.

Internship student

Microbial. Sistemes i aplicacions analítiques, S.L.

Girona, Spain

09/2016 - 06/2017

Microbiological and molecular analyses of food and water samples to search for pathogens and perform food forensics.

Education

MSc in Bioinformatics and Biostatistics

Universitat Oberta de Catalunya

Online

2018 - Present

MSc in Molecular Genetics and Biotechnology

Universidad de Sevilla

Seville, Spain

2017 - 2018

  • Specialization on Molecular Biology R&D
  • Master’s thesis: Influence of Xrn1 in nucleosome positioning across Saccharomyces cerevisiae genome and its effects in transcription.

BSc in Biotechnology

Universitat de Girona

Girona, Spain

2012 - 2017

  • Specialization in Cellular & Molecular Biotechnology.
  • Bachelor’s thesis: Butyrate-induced changes in the diversity of intestinal mucosa-associated microbiota in colorectal cancer patients submitted to a lateral ileostomy.

Publications

Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

Begley V et al. RNA Biology. DOI: 10.1080/15476286.2020.1845504.

N/A

2020

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Development

chromHMMviewR:

DPomics (ongoing):

DNAme:

ATAC-seq snakemake (ongoing):

Additional education

IELTS Academic Exam

DataCamp:

Organizations

ASBTEC:

SCB:

Honors & Awards

Elite sportsman:

World Rowing U23 Champion: